Manuel B. Garcia

Manuel B. Garcia serves as the Senior Director for Educational Technology and Digital Learning at FEU Institute of Technology, Manila, Philippines. Read More

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Can You Upload Confidential Peer-Review Material to an AI Tool?

Peer-review manuscripts and associated materials are confidential information entrusted to reviewers and editors for a limited purpose. Do not upload them to an external AI tool unless the journal explicitly permits the use and the required confidentiality can be assured.

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Confidential Peer Review and AI Guide 105 of 717
01 · The Question

Can a Reviewer Give a Confidential Manuscript to AI?

You agree to review a manuscript. The paper is dense, the methods are unfamiliar in places, and the deadline is close. An AI system could summarize the manuscript, identify possible methodological weaknesses, check the statistics, compare the argument with existing literature, or draft a review.

Technically, all you need to do is upload the PDF.

But the manuscript was not given to you for unrestricted use. You received it because a journal entrusted you with unpublished material for the specific purpose of confidential peer review. That relationship substantially changes what you may do with the file.

02 · The Short Answer

Do Not Upload Confidential Peer-Review Material by Default

In Brief

Do not upload a submitted manuscript, confidential review material, or information derived from it to an external AI tool unless the journal explicitly permits that use and the required confidentiality can be assured.

Major publishing guidance treats submitted manuscripts as confidential or privileged communications. Some publishers expressly prohibit reviewers from uploading manuscripts or information from them to AI tools, while broader guidance requires reviewers to follow the journal's policy or obtain permission before using AI in the review process.

03 · What You Need to Know

Peer Review Gives You Access, Not General Permission to Redistribute

The manuscript is entrusted to you for a limited purpose

Peer review depends on researchers being willing to share unpublished work with editors and reviewers before publication. Confidentiality is part of the mechanism that makes this possible.

ICMJE describes manuscripts submitted to journals as privileged communications and authors' private, confidential property. It states that reviewers must keep manuscripts and the information they contain strictly confidential, must not publicly discuss the work, and must not appropriate authors' ideas before publication.

Elsevier similarly requires manuscripts received for review to be treated as confidential documents and prohibits reviewers from sharing review information without appropriate permission.

Uploading a manuscript to an external AI service is therefore not merely "using software." It can constitute disclosure of material that was entrusted to you under confidentiality.

The restriction can cover information from the manuscript, not only the PDF

Confidentiality does not vanish when information is copied out of the original file.

Consider these prompts:

  • "Summarize this unpublished manuscript," followed by the full text.
  • "Is this result novel?" followed by the paper's central unpublished finding.
  • "Find flaws in this method," followed by three paragraphs from the Methods section.
  • "Help me write my review," followed by your notes describing the paper's results and weaknesses.

In each case, the AI may receive confidential information even though only the first prompt includes the complete manuscript.

Elsevier's current reviewer policy makes this explicit: reviewers must not upload a submitted manuscript, any part of it, or information from it into AI tools. The concern includes authors' confidentiality, proprietary rights, and potential data-privacy rights.

Different journals can impose different AI rules

There is no single worldwide peer-review AI policy.

ICMJE takes a principles-based approach. Reviewers must follow the journal's stated AI policy or request permission before using AI to facilitate their review. It states that maintaining manuscript confidentiality may prohibit uploading the manuscript to AI technology where confidentiality cannot be assured unless the journal explicitly permits such use.

Elsevier's current journal policy is more specific. Reviewers must not upload submitted manuscripts or information from them into AI tools. It allows AI only in a supportive capacity, such as improving the language or structure of a review report or assisting with background literature searches, provided confidentiality is maintained, human control remains, and an appropriate private AI tool is used. Qualifying AI assistance must also be disclosed.

The practical rule is therefore straightforward: the journal's actual policy controls your review assignment.

Proposed AI use Confidentiality issue What to do
Upload the entire manuscript for summarization Discloses the confidential manuscript Do not do this unless explicitly permitted under the journal's applicable policy and confidentiality requirements
Paste a methods section for criticism Discloses part of the confidential manuscript Treat manuscript excerpts as confidential too
Describe unpublished findings without quoting them Can still disclose information obtained through review Do not assume paraphrasing removes confidentiality
Ask AI about a generic statistical method without mentioning the paper May require no manuscript information Potentially possible if consistent with journal policy
Improve the grammar of your review report The report itself may reveal manuscript information Follow the journal's specific policy and remove confidential content where necessary

"I did not upload the manuscript" is not always enough

A reviewer can disclose confidential research without attaching a file. Detailed prompts can reveal the manuscript's hypotheses, results, methods, limitations, identities, or novel ideas.

This is particularly important when using AI to fact-check or critique the manuscript. To obtain a highly specific answer, the reviewer may be tempted to provide precisely the unpublished details that confidentiality protects.

The correct unit of analysis is therefore information disclosed, not simply whether a PDF was uploaded.

A private or enterprise AI tool does not automatically override journal policy

Data protections matter. Elsevier currently defines a private AI tool for reviewer support as one that does not retain, reuse, share, or learn from submitted content beyond what is necessary to provide the service. It recommends verifying privacy policies and terms rather than assuming that a paid or enterprise product is private.

Even so, technical privacy and editorial permission are different requirements. A highly secure institutional AI system does not grant you permission to upload a manuscript when the journal prohibits it.

Technical confidentiality Concerns how the AI system stores, uses, shares, protects, and provides access to submitted information.
Editorial authorization Concerns whether the journal permits you to provide peer-review information to that AI system at all.

You may need both. One does not substitute for the other.

Turning off model training is not sufficient

A reviewer might reason that the manuscript is safe because the AI service promises not to use prompts for model training. That addresses one possible use of the information but not the underlying disclosure.

The manuscript still leaves the review environment and is processed by another system. Retention, access, logging, service providers, contractual terms, and journal policy can remain relevant. More fundamentally, a publisher may prohibit the upload regardless of training settings.

This is why whether prompts are used for AI model training cannot answer the peer-review confidentiality question by itself.

Peer-review confidentiality also protects intellectual priority

A manuscript may contain ideas, results, methods, inventions, or interpretations that have not yet entered the public record. Reviewers gain early access because the journal needs expert evaluation, not because the material has become available for general use.

ICMJE specifically states that reviewers must not appropriate authors' ideas before publication. Elsevier likewise states that unpublished materials disclosed in a submitted manuscript must not be used in the reviewer's own research without the author's express written consent.

AI disclosure can therefore implicate not only privacy but also authors' proprietary interests and expectations concerning intellectual priority.

Peer-review material may contain personal or sensitive information

Some manuscripts contain participant quotations, case histories, clinical details, photographs, geographic information, or other potentially identifiable data. Uploading such material can add a data-privacy issue to the existing editorial confidentiality problem.

Elsevier's policy explicitly identifies possible breaches of personally identifiable information as one reason reviewers must not upload manuscripts into AI tools.

Even a manuscript that has passed a journal's anonymization process may contain information that remains sensitive or indirectly identifiable.

Review reports and editorial correspondence can also be confidential

Confidential peer-review material extends beyond the author's PDF. It can include reviewer reports, confidential comments to the editor, editor correspondence, decision letters, supplementary files, reviewer identities, manuscript-status information, and notes created from the manuscript.

ICMJE states that editors should not disclose manuscript content, review status, reviewer criticism, or the ultimate fate of a manuscript beyond appropriate participants in the process. Elsevier's policies similarly extend confidentiality to review-related communications.

Therefore, using reviewer comments with AI requires attention to what those comments reveal and the role in which you received them.

AI also creates an assessment-quality problem

Even if confidentiality were fully addressed, outsourcing the intellectual assessment of a manuscript raises a separate problem. Peer review requires disciplinary judgment for which the invited reviewer is accountable.

ICMJE warns that AI can generate output that sounds authoritative while being incorrect, incomplete, or biased. Elsevier states that AI cannot replace reviewers' critical thinking or independent evaluation and that reviewers remain responsible for their reports.

A reviewer was invited because of their expertise. Sending the paper to a model and asking, "What is wrong with this?" rather misses the job description.

Watch Out

Do not assume that paraphrasing an unpublished result, copying only one paragraph, or using a no-training AI account eliminates peer-review confidentiality. The question is whether confidential information is being disclosed and whether the journal permits that disclosure.

04 · A Practical Example

A Reviewer Wants AI Help With an Unfamiliar Analysis

Hypothetical Example

The manuscript uses a statistical method the reviewer rarely encounters

A reviewer understands the substantive field but wants to verify several assumptions of a statistical technique used in the manuscript. The easiest approach would be to paste the Methods section and results table into an AI assistant and ask whether the analysis is appropriate.

Recognize the confidentiality problem The Methods section and unpublished results were provided through confidential peer review. Copying them into an external AI system would disclose manuscript information.
Check the journal policy The reviewer reads the journal's current AI instructions rather than relying on general assumptions about acceptable AI use.
Separate the methodological question Instead of providing manuscript information, the reviewer consults authoritative statistical literature or, where journal policy permits, asks a completely generic question about the assumptions of the method without revealing details from the paper.
Apply independent judgment The reviewer compares the methodological requirements with the manuscript personally and decides whether the analysis is defensible.
Remain accountable The final review reflects the reviewer's own assessment, with any permitted AI assistance disclosed where required.

The reviewer can obtain methodological support without turning the confidential manuscript into the prompt.

05 · What Researchers Often Get Wrong

Common Misunderstandings About AI in Confidential Peer Review

Misconception

I Agreed to Review the Manuscript, So I Can Choose Whatever Tools I Need

Accepting a review assignment gives you access to the manuscript under the journal's review conditions. It does not create unrestricted authority to disclose the manuscript to external services. Journal and publisher policies remain controlling.

Misconception

Uploading One Paragraph Is Different From Uploading the Manuscript

The amount disclosed may differ, but an excerpt can still be confidential manuscript content. Some publisher policies expressly prohibit uploading any part of a submitted manuscript or information derived from it.

Misconception

If AI Training Is Disabled, Peer-Review Confidentiality Is Protected

No-training controls do not themselves establish editorial authorization. The service still processes the information, and the journal may prohibit the disclosure independently of the provider's training practices.

Misconception

A Paid Enterprise AI Account Is Automatically Approved for Peer Review

Enterprise services may offer stronger privacy and contractual protections, but those protections do not override the journal's AI policy. Verify both the tool's safeguards and the journal's authorization.

Misconception

I Can Avoid the Rule by Describing the Manuscript Instead of Uploading It

A detailed description can disclose the same unpublished hypotheses, methods, results, or ideas. Confidentiality follows the information, not the file format.

Misconception

AI Can Perform the Initial Review and I Can Verify It Afterwards

That still delegates substantive assessment of confidential research to the AI system and may conflict with journal policy. It also creates reliability problems because AI-generated critiques can be incomplete, incorrect, or biased. The invited reviewer remains responsible for the intellectual evaluation.

06 · What This Means for You

Treat Confidentiality as the Starting Condition of Peer Review

When you accept a review assignment, the useful default is not "AI is allowed unless prohibited." Begin from the fact that you have been entrusted with confidential unpublished information and determine what the journal permits from there.

A simple decision framework

If the proposed AI task requires uploading the manuscript or an excerpt from it
Do not proceed unless the journal's policy explicitly permits that use and the required confidentiality can be assured.
If the proposed prompt would describe unpublished findings, methods, arguments, or other information obtained from the manuscript
Treat that information as confidential even though the original file is not attached.
If you need background help with a general concept
Use public literature or a genuinely generic question that does not reveal information from the manuscript, provided this is consistent with the journal's policy.
If the journal expressly permits limited AI support
Stay within the permitted scope, use an appropriately protected service where required, maintain human judgment, and disclose AI use when the policy requires it.
If the journal provides no clear AI policy
Follow applicable publishing guidance and ask the journal before submitting confidential material rather than interpreting silence as permission.

The safest default for material entrusted to you in confidence is stricter than for your own ordinary unpublished notes. That principle is developed more broadly in the safest default for confidential and unpublished research information.

07 · A Quick Checklist

Before Using AI During Confidential Peer Review

Before involving an AI tool in a review, check:
Read the specific journal or publisher's current AI policy for reviewers.
Treat the manuscript, supplementary files, unpublished findings, review notes, and information obtained from the manuscript as confidential.
Do not assume that an excerpt, paraphrase, screenshot, table, figure, or detailed description falls outside the confidentiality obligation.
Do not infer permission from a no-training setting, private mode, paid account, or enterprise label.
Use public sources or generic questions when you need background information that can be obtained without revealing manuscript content.
If limited AI assistance is permitted, verify that the tool meets the journal's confidentiality and privacy requirements.
Keep the scientific evaluation and final judgment under your own control and verify any AI-assisted material independently.
Disclose permitted AI use to the journal when its policy or applicable publishing guidance requires disclosure.
08 · Frequently Asked Questions

Questions About Confidential Peer Review and AI

Can I upload a manuscript I am reviewing to ChatGPT?

Do not do so unless the journal explicitly permits the proposed use and the required confidentiality can be assured. Some publishers, including Elsevier, expressly prohibit reviewers from uploading submitted manuscripts or information from them into AI tools.

Can I paste just the Methods section into AI?

A Methods section remains part of the confidential manuscript. Uploading only one section does not automatically avoid the journal's confidentiality requirements or AI restrictions.

Can I describe the paper to AI without copying any text?

A detailed description may still reveal confidential hypotheses, findings, methods, arguments, or other information obtained through peer review. Confidentiality applies to the information, not merely verbatim manuscript text.

Can I ask AI a generic methodological question while reviewing?

Potentially, if the question genuinely contains no confidential manuscript information and the journal's policy permits the use. Public methodological literature may often provide a more authoritative source for such questions.

Does ICMJE completely prohibit reviewers from using AI?

No. ICMJE states that reviewers must follow the journal's AI policy or request permission before using AI to facilitate their review. It emphasizes that manuscript confidentiality may prohibit uploads where confidentiality cannot be assured and requires reviewers using AI to disclose its use to the journal.

Does Elsevier allow reviewers to use AI?

Elsevier currently prohibits reviewers from uploading submitted manuscripts or information from them into AI tools. It permits limited supportive uses, such as improving review language or structure or assisting with background literature searches, subject to confidentiality, appropriate private-tool requirements, human oversight, and disclosure of qualifying use.

What if I already uploaded a confidential manuscript to an AI tool?

Stop further disclosure, document enough information to understand what was submitted and where, use applicable deletion controls, and check the journal, institution, and provider requirements promptly. The next steps are addressed in what to do after accidentally entering confidential research information into AI.

09 · The Bottom Line

A Review Invitation Is Not Permission to Share the Manuscript With AI

The Bottom Line

Do not upload confidential peer-review material to an external AI tool unless the journal explicitly permits the use and the confidentiality required by the review process can be assured.

The obligation follows the information, not merely the manuscript file. Excerpts, paraphrases, results, review notes, and editorial correspondence can also reveal confidential research. Check the journal's policy first, keep substantive evaluation under human control, and when confidential material is unnecessary for the task, keep it out of the prompt entirely.

10 · Sources and Further Reading

Authoritative Guidance on Confidentiality, Peer Review, and AI

11 · Cite this Guide

How to Cite This Guide

This guide is intended to be read, shared, and used in research, teaching, and academic work. If you draw on its ideas, explanations, or other content, please acknowledge the source by citing the guide. Doing so gives appropriate credit and helps your readers locate the original resource.

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