01 · The Question
What if Your University Permits AI but the Journal Does Not?
Your university permits researchers to use generative AI. You follow its rules, use an approved tool, and keep responsibility for your work. Then you prepare a manuscript and discover that the journal has additional restrictions on AI-generated text, images, authorship, disclosure, or peer review.
Does your university's permission mean the journal must accept the same AI use?
No. Universities and journals govern different relationships. Your university determines what is permissible within its institutional and research environment. A journal or publisher establishes conditions for manuscripts and other material it agrees to consider and publish. Compliance with one does not automatically establish compliance with the other.
03 · What You Need to Know
University Permission and Journal Permission Answer Different Questions
Your University Governs Your Research Environment
A university may determine whether researchers can use particular AI systems, what categories of institutional or research data can be entered into them, what security safeguards are required, and how AI use interacts with research integrity, ethics, privacy, intellectual property, and other institutional responsibilities.
When your university says an AI tool is permitted, that permission should therefore be read within its scope. It does not constitute a promise that every journal will accept every output produced with that tool.
The Journal Governs What It Will Consider for Publication
A journal enters the picture when you submit scholarly work for editorial consideration. It can establish conditions concerning manuscript preparation, disclosure, authorship, figures, supporting material, research reporting, and participation in peer review.
The International Committee of Medical Journal Editors currently recommends that journals maintain policies on AI use and make those policies known to authors, reviewers, and editors. Its recommendations state that AI tools should not be listed as authors, humans remain responsible for AI-assisted material, AI use should be disclosed, and unpublished manuscripts should not be uploaded to AI systems where confidentiality cannot be assured without appropriate permission.
Individual publishers can then implement more detailed requirements. Elsevier's current journal policy, for example, requires disclosure of generative AI use in manuscript preparation when it goes beyond specified basic functions such as spelling, grammar, and punctuation checks. AI used as part of the research process should instead be described in the Methods section. Springer Nature currently uses a risk-based framework that distinguishes lower-risk assistance from uses requiring greater scrutiny and uses it does not permit.
These requirements apply because of the publication relationship, not because the journal controls your university.
A Journal May Distinguish Writing Assistance From Scholarly Contribution
Policies increasingly distinguish among different levels of AI involvement rather than treating all AI use as equivalent.
| Possible AI Use |
Questions a Journal Policy May Address |
| Spelling or grammar correction |
Is it permitted? Does it require disclosure? |
| Translation or readability improvement |
How extensive was the assistance, and must it be declared? |
| Drafting manuscript passages |
Is substantive generation permitted, and what human oversight and disclosure are required? |
| Generating interpretations or conclusions |
Does the policy prohibit delegating scholarly judgement or intellectual contribution to AI? |
| AI-assisted data analysis or coding |
Must the tool and procedure be described as part of the research methodology? |
| AI-generated or modified figures |
Is the visual permitted, verifiable, accurately represented, and appropriately disclosed? |
| Listing an AI system as an author |
Does the journal recognise only humans or other accountable persons as authors? |
Springer Nature's current policy illustrates this task-sensitive approach. It describes low-risk uses such as language and presentation assistance, treats AI that contributes more substantially to structure or written content with greater caution, and does not permit AI to replace accountable scholarly authorship or independently generate scholarly claims or interpretations presented as human-derived.
Elsevier similarly states that AI may support manuscript preparation but must not replace the author's intellectual contribution. Authors remain responsible for the accuracy and integrity of the submitted work.
Disclosure Can Be a Condition of Submission
Your university may allow AI-assisted writing without requiring a particular statement in every research output. A journal can nevertheless require disclosure as a condition of submission.
ICMJE currently recommends that journals require authors to disclose whether AI-assisted technologies were used in producing submitted work and to describe how they were used. Elsevier requires a declaration for qualifying generative AI use in manuscript preparation and specifies the information the declaration should contain. Springer Nature likewise expects transparent declaration of AI use under its current editorial framework.
This means that "my university did not require disclosure" is not a sufficient reason to omit a declaration required by the journal.
Permission to use AI
Whether an applicable authority allows a particular AI activity under specified conditions.
Requirement to disclose AI
Whether an authority requires you to report that use, where the disclosure must appear, and what details it must contain.
A use can be permitted and still require disclosure. Conversely, disclosing a prohibited use does not make it permissible.
Journals Can Restrict AI-Generated Visual Material
Visual content deserves a separate policy check. AI-generated or AI-modified images, figures, illustrations, and other visual material can raise questions about authenticity, verifiability, copyright, representation of evidence, and research integrity.
Springer Nature's current policy permits some AI-assisted visual content when it derives from verifiable source material or data, is appropriately reviewed and disclosed, and accurately represents the underlying evidence. By contrast, it states that AI-generated visual content without independently verifiable inputs or source material is not permitted under its policy.
A researcher should therefore not assume that permission to use an AI image generator at the university level means an AI-generated figure will satisfy a particular journal's editorial requirements.
AI Used in the Research May Need Methodological Reporting
Not every journal restriction concerns writing. If AI was part of the actual research method, editors and readers may need enough information to understand and evaluate what was done.
Elsevier's current journal policy explicitly distinguishes AI used for manuscript preparation from AI used in the research process. Where AI tools are part of research methods, it directs authors to describe that use in the Methods section.
This distinction is important. An AI declaration about writing assistance is not necessarily a substitute for methodological reporting when an AI system materially contributed to data processing, analysis, classification, modelling, or another research procedure.
Journals Also Regulate AI Use by Reviewers and Editors
AI publishing policies do not concern authors alone. Submitted manuscripts are confidential scholarly communications.
ICMJE states that reviewers must follow the journal's AI policy or request permission before using AI to facilitate review. It also warns against uploading manuscript material to AI systems where confidentiality cannot be assured. Similar confidentiality concerns apply to editors.
This produces an important asymmetry. A journal might permit an author to use AI when preparing their own manuscript but prohibit a reviewer from uploading that manuscript to an external AI service. The difference is ownership and confidentiality of the information being processed.
The Specific Journal Matters, Not Just General Publisher Practice
Publisher-level policies are useful, but researchers should still check the instructions of the actual journal. A journal may operate within a broader publisher framework while maintaining discipline-specific instructions, disclosure procedures, or additional requirements.
The same caution applies when researchers learn what their university permits. A policy should be read according to its actual scope rather than extrapolated beyond it.
Journal Policies Can Change Between Research and Submission
A manuscript may be submitted months or years after a project begins. AI policies can change during that interval.
Consequently, a journal policy you checked while conducting the research may not be the policy in force when you submit. Current publisher policies from ICMJE-aligned journals, Elsevier, Springer Nature, and others continue to evolve as publishing practices and AI technologies change.
Researchers should therefore recheck relevant AI policies during long projects, particularly before manuscript submission.
07 · A Quick Checklist
Before Submitting AI-Assisted Work to a Journal
Before submission, check:
Read the target journal's current author instructions and AI policy rather than relying only on your university's guidance.
Check the publisher-level AI policy when the journal incorporates or supplements it.
Identify exactly how AI contributed to manuscript preparation, research methods, analysis, code, figures, or other submitted material.
Determine whether your particular AI use is permitted, restricted, or prohibited by the journal.
Follow the journal's current disclosure requirements, including where and how the AI use should be reported.
Verify all AI-assisted content, citations, interpretations, calculations, and other scholarly material for which you remain responsible.
Check separate requirements for AI-generated or AI-modified images and other visual content.
If you are also serving as a reviewer, follow the journal's reviewer AI and confidentiality rules rather than assuming author permissions apply.